Synteny plot quality control with SyntenyQC.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 41233978.
- Also identified by DOI 10.1093/bioinformatics/btaf626 and PMC identifier 12721865.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
SyntenyQC is a data pre-processing tool for the construction of synteny plots. It supports genomic data collection, annotation and dereplication to facilitate (and in some cases fundamentally enable) the construction of informative synteny plots. SyntenyQC is a command line app developed using Python version 3.10 and tested using pytest. SyntenyQC is available on PyPI (https://pypi.org/project/SyntenyQC) under the MIT License, along with a detailed user tutorial. Package tests can be viewed at https://github.com/Tim-Kirkwood/SyntenyQC.
Medical subject headings
- Synteny
- Software
- Genomics