The <i>Shigella flexneri</i> effector IpaH1.4 facilitates RNF213 degradation and protects cytosolic bacteria against interferon-induced ubiquitylation.

Saavedra-Sanchez, Luz; Dickinson, Mary S; Apte, Shruti S; Zhang, Yifeng; De Jong, Maarten; Skavicus, Samantha; Heaton, Nicholas S; Alto, Neal M et al. · Elife · 2025

basic_science · Level V

Where this comes from

Abstract

A central signal that marshals host defense against many infections is the lymphocyte-derived cytokine interferon-gamma (IFNγ). The IFNγ receptor is expressed on most human cells, and its activation leads to the expression of antimicrobial proteins that execute diverse cell-autonomous immune programs. One such immune program consists of the sequential detection, ubiquitylation, and destruction of intracellular pathogens. Recently, the IFNγ-inducible ubiquitin E3 ligase RNF213 was identified as a pivotal mediator of such a defense axis. RNF213 provides host protection against viral, bacterial, and protozoan pathogens. To establish infections, potentially susceptible intracellular pathogens must have evolved mechanisms that subdue RNF213-controlled cell-autonomous immunity. In support of this hypothesis, we demonstrate here that a causative agent of bacillary dysentery, <i>Shigella flexneri</i>, uses the type III secretion system (T3SS) effector IpaH1.4 to induce the degradation of RNF213. <i>S. flexneri</i> mutants lacking IpaH1.4 expression are bound and ubiquitylated by RNF213 in the cytosol of IFNγ-primed host cells. Linear (M1-) and lysine-linked ubiquitylation of <i>S. flexneri</i> requires RNF213 but is independent of the linear ubiquitin chain assembly complex (LUBAC). We find that ubiquitylation of <i>S. flexneri</i> is insufficient to kill intracellular bacteria, suggesting that <i>S. flexneri</i> employs additional virulence factors to escape from host defenses that operate downstream from RNF213-driven ubiquitylation. In brief, this study identified the bacterial IpaH1.4 protein as an inhibitor of mammalian RNF213 and highlights evasion of RNF213-driven immunity as a characteristic of the human-tropic pathogen <i>Shigella</i>.

Medical subject headings