Capturing gene-cell duality in a cat's cradle.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 41520315.
- Also identified by DOI 10.1093/bioinformatics/btaf681 and PMC identifier 12831930.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
CatsCradle is an R package for single-cell analysis that exploits the duality between cells and the genes they express. Our package provides tools to cluster genes, visualize relationships between them, and to explore relationships between gene clusters (programmes) and cell clusters (cell types). CatsCradle is available freely as an R Bioconductor package (https://bioconductor.org/packages/CatsCradle) and interfaces directly with Seurat (Hao et al. 2024) and SingleCellExperiment (Amezquita et al. 2020) data structures.
Medical subject headings
- Software
- Single-Cell Analysis
- Multigene Family
- Computational Biology