Data management for distributed computational workflows: An iRODS-based setup and its performance.
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- Record sourced from PubMed, PMID 41525253.
- Also identified by DOI 10.1371/journal.pone.0340757 and PMC identifier 12795369.
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Abstract
Modern data-management frameworks promise a flexible and efficient management of data and metadata across storage backends. However, such claims need to be put to a meaningful test in daily practice. We conjecture that such frameworks should be fit to construct a data backend for workflows which use geographically distributed high-performance and cloud computing systems. Cross-site data transfers within such a backend should largely saturate network bandwidth, in particular when parameters such as buffer sizes are optimized. To explore this further, we evaluate the "integrated Rule-Oriented Data System" iRODS with EUDAT's B2SAFE module as data backend for the "Distributed Data Infrastructure" within the LEXIS Platform for complex computing workflow orchestration and distributed data management. The focus of our study is on testing our conjectures-i.e., on construction and assessment of the data infrastructure and on measurements of data-transfer performance over the wide-area network between two selected supercomputing sites connected to LEXIS. We analyze limitations and identify optimization opportunities. Efficient utilization of the available network bandwidth is possible and depends on suitable client configuration and file size. Our work shows that systems such as iRODS nowadays fit the requirements for integration in federated computing infrastructures involving web-based authentication flows with OpenID Connect and rich on-line services. We are continuing to exploit these properties in the EXA4MIND project, where we aim at optimizing data-heavy workflows, integrating various systems for managing structured and unstructured data.
Medical subject headings
- Workflow
- Data Management