igv-reports: embedding interactive genomic visualizations in HTML reports to aid variant review.
Where this comes from
- Record sourced from PubMed, PMID 41808454.
- Also identified by DOI 10.1093/bioinformatics/btag125 and PMC identifier 13070637.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
We present igv-reports, a command-line tool to create standalone HTML pages embedding interactive genomic visualizations of read alignments and associated annotations to support variant inspection workflows. The reports contain all data and code required for visualization of the variant sites, with no dependencies on the input data files. igv-reports is a command-line application written in Python. It is freely available at https://github.com/igvteam/igv-reports under an MIT license.
Medical subject headings
- Software
- Genomics
- Genetic Variation