Ancient regulatory evolution shapes individual language abilities in present-day humans.

Casten, Lucas G; Koomar, Tanner; Thomas, Taylor R; Koh, Jin-Young; Hofammann, Dabney; Thenuwara, Savantha; Momany, Allison; O'Brien, Marlea et al. · Sci Adv · 2026

basic_science · Level V

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Abstract

Language is a defining feature of our species, yet the genomic changes enabling it remain poorly understood. Despite decades of work since <i>FOXP2</i>'s discovery, we still lack a clear picture of which regions shaped language evolution and how variation contributes to present-day phenotypic differences. Using an evolutionary stratified polygenic score approach, we find that human ancestor quickly evolved regions (HAQERs) are associated with spoken language abilities (discovery <i>N</i> = 350, total replication <i>N</i> > 100,000). HAQERs evolved before the human-Neanderthal split, giving hominins increased binding of Forkhead and Homeobox transcription factors, and show evidence of balancing selection across the past 20,000 years. Language-associated variants in HAQERs appear more prevalent in Neanderthals, and HAQER-like sequences show convergent evolution across vocal-learning mammals. Our results reveal how ancient innovations continue shaping human language.

Medical subject headings