Submicrometre sampling of living cells by macrophages.

Fan, Amy C; Thota, Rukman R; Serwas, Nina; Vykunta, Vivasvan S; Marchuk, Kyle; Ruhland, Megan K; Liu, Lauren; Johnson, Grace et al. · Nature · 2026

basic_science · Level V

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Abstract

An effective immune system must sample and develop healthy self-identity to prevent autoimmunity and to discern pathogenic insults<sup>1-3</sup>. Self-proteins are presented to T cells in the thymus during immune cell development<sup>2,3</sup> and must be presented throughout the body to maintain regulatory T cell populations<sup>4-6</sup> and to provide tonic signals to sustain conventional T cells over time<sup>7-9</sup>. Observations of continuous apoptosis in some organs together with the ingestion of that material by myeloid populations has led to a conventional understanding of ongoing cell death as a major source of self-antigens<sup>10</sup>. Here we used a series of companion imaging and vesicular labelling technologies to reveal an alternative process undertaken by macrophages that results in non-destructive, direct sampling of living cells. This process requires cell-cell contact, does not require caspase activation and occurs via trogocytosis-like stretching of the target cell into the macrophage, which leads to the generation of submicrometre-sized vesicles that contain cytoplasm. Using a high-dimensional flow-based method for labelling vesicles, we demonstrate that live-sampled material is distinctly processed and is poorly subjected to fusion with lysosomes. The material also produces differential effects on the presentation of antigen to CD4 T cells compared with CD8 T cells. Disruption of this trafficking by redirecting antigen to the lysosome significantly reduced the associated macrophage-mediated priming of CD8 T cells. These results demonstrate an important and substantial sampling of living cells by the immune system, with clear consequences for maintaining the border of immunity.

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