Compaction and swelling of single stretched DNAs driven by molecular crowding.

Abstract

We present a theory for the effects of osmotic pressure exerted by macromolecular crowders on a double-stranded DNA or other semiflexible polymer extended by tension. Our results predict the force and crowder-density dependence of the polymer extension. The lowest-order effect is a crowder-dependent compression that counteracts the external stretching force, which can collapse the polymer at a crowder-dependent critical force f^{*}. This compression is dependent on crowder radius r and density ϕ, with higher densities and smaller radii having greater effects on the force-extension curve. At first order in perturbation theory, we also find a fluctuation-dependent correction to the depletion volume, which can overwhelm the simple compression effect for large crowders, leading to expansion of the polymer.