SpaMTP: integrative statistical analysis and visualization of spatial metabolomics and transcriptomics data.
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- Record sourced from PubMed, PMID 42538468.
- Also identified by DOI 10.1038/s41592-026-03140-8.
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Abstract
Spatially resolved multimodal data enable the exploration of transcriptional, proteomic and metabolic regulation, yet analytical tools to integrate these spatial omics modalities, particularly spatial metabolomics, remain limited. We developed SpaMTP, an end-to-end framework that implements functions within a common Seurat architecture. It introduces analyses for metabolite annotation, joint clustering, enrichment tests, spatial alignment, multimodal integration, visualization and seamless software interoperability. Its utility is demonstrated across different biological systems.