HIV-1 genotypic resistance: automated sequence analysis and interpretation.

Goujon, C P; Schneider, V M; Jacomet, C; Nicolas, J C · Bioinformatics · 1998

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Abstract

We present here GRANT ( G enotypic R esistance An alysis T ool), a program that automatically detects resistance-related mutations in HIV-1 protein sequences, and comments on the degree of resistance conferred when possible. This program is easily user-customizable, allowing immediate updates as new resistance mutations are discovered, or use with an organism other than HIV. The package is available free of charge over the internet, either directly from the authors, or by anonymous ftp (ftp. infobiogen.fr/pub/logiciels/mac/biology or windows as appropriate). Versions exist for PPC and 68K Apple Macintosh running MacOS 7.5 or higher. Microsoft Excel 5.0 is required for quality output. A PC version is in progress. goujon@infobiogen.fr

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